erahumed

The erahumed R package provides the infrastructure for the ERAHUMED Decision Support System (DSS), that consists of:

• Data. The inputs for the DSS are packaged as R data.frames imported with erahumed.
• Analysis. The entire modeling pipeline is implemented by R functions.
• Visualization. All model outputs are R objects with methods for data exploration and visualization.
• Interactive Interface. All of the above has a graphical interface implemented as a Shiny application, which is also bundled with the package.

Installation

You can install the latest release of erahumed from Github, by running the following command in your local R session:

remotes::install_github("erahumed/erahumed@*release")

If you want the development version (notice: this may be unstable), simply omit the @*release reference, as in:

remotes::install_github("erahumed/erahumed")  # development version

Usage

Example 1: Using the interactive dashboard

The graphical interface to the ERAHUMED DSS can be accessed through the following R command:

erahumed::launch_app()

This will open the DSS dashboard in your default browser, from where you can explore model outputs in a user friendly manner.

Example 2: command line interface to the models

TODO #81.

Getting help

If you have issues running erahumed or want to suggest an improvement, please file an issue on Github.

An internal documentation, aimed at potential contributors to this project, is available at Github Wiki.