Define a pesticide with physico-chemical and toxicity properties
Source:R/chem--s3-class.R
chemical.Rd
Creates a list of parameters that define a pesticide or chemical substance, including its identity, degradation rates, sorption properties, and toxicity to aquatic organisms.
Usage
chemical(
display_name,
tmoa_id,
MW = 330,
ksetl_m_day = 2,
sol_ppm = 500,
koc_cm3_g = 200,
fet_cm = 0.2,
kf_day = 0.2,
kw_day = 0.05,
ks_sat_day = 0.05,
ks_unsat_day = 0.05,
kw_temp = 20,
ks_sat_temp = 20,
ks_unsat_temp = 20,
Q10_kw = 2.58,
Q10_ks_sat = 2.58,
Q10_ks_unsat = 2.58,
ssd_acute_mu = 7.5,
ssd_acute_sigma = 2.5,
ssd_chronic_mu = 4.5,
ssd_chronic_sigma = 2.5
)
Arguments
- display_name
[character(1)]
The common name of the chemical (e.g., "Acetamiprid").- tmoa_id
[character(1)]
Identifier for the toxic mode of action (e.g., "NicotinicAcetylcholine").- MW
[numeric(1)]
Molecular weight in grams per mole.- ksetl_m_day
[numeric(1)]
Settling rate, representing particle-bound transfer to sediment.- sol_ppm
[numeric(1)]
Water solubility.- koc_cm3_g
[numeric(1)]
Organic carbon-water partition coefficient (Koc).- fet_cm
[numeric(1)]
Fraction of pesticide washed off from foliage per cm of rainfall.- kf_day
[numeric(1)]
Degradation rate in foliage.- kw_day
[numeric(1)]
Degradation rate in the water column.- ks_sat_day
[numeric(1)]
Degradation rate in saturated sediment.- ks_unsat_day
[numeric(1)]
Degradation rate in unsaturated sediment.- kw_temp
[numeric(1)]
Reference temperature for kw_day.- ks_sat_temp
[numeric(1)]
Reference temperature for ks_sat_day.- ks_unsat_temp
[numeric(1)]
Reference temperature for ks_unsat_day.- Q10_kw
[numeric(1)]
Q10 coefficient for temperature correction of degradation in water.- Q10_ks_sat
[numeric(1)]
Q10 coefficient for temperature correction in saturated sediment.- Q10_ks_unsat
[numeric(1)]
Q10 coefficient for temperature correction in unsaturated sediment.- ssd_acute_mu
[numeric(1)]
Mean (log10 scale) of the acute species sensitivity distribution.- ssd_acute_sigma
[numeric(1)]
Standard deviation (log10 scale) of the acute species sensitivity distribution.- ssd_chronic_mu
[numeric(1)]
Mean (log10 scale) of the chronic species sensitivity distribution.- ssd_chronic_sigma
[numeric(1)]
Standard deviation (log10 scale) of the chronic species sensitivity distribution.
Details
If not explicitly specified, default values will be used for all parameters
except display_name
and tmoa_id
. These defaults are intended to represent
typical or illustrative values and do not correspond to any specific real-world
chemical. They are provided solely for convenience in prototyping or testing.
For a detailed explanation of chemical parameters, their meaning, units, and role in the model, see the Chemical parameters section of the user manual.